@ Ontology Change Report @ First ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/156/fypo.obo @ Second ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/155/fypo.obo @ File Written at 2013.11.19 at 12:43:26 PST @ Number of classes changed: 30 @ Number of classes added: 0 @Classes modified from previous --- Class Changed: http://www.geneontology.org/go#FYPO_0002892 label: normal heterochromatin organization during vegetative growth - SubClassOf('normal heterochromatin organization during vegetative growth' 'abnormal chromatin organization during vegetative growth') - EquivalentClasses('normal heterochromatin organization during vegetative growth' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'heterochromatin organization') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('normal heterochromatin organization during vegetative growth' ObjectSomeValueFrom('inheres_in' 'heterochromatin organization')) - SubClassOf('normal heterochromatin organization during vegetative growth' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('normal heterochromatin organization during vegetative growth' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('normal heterochromatin organization during vegetative growth' 'normal chromatin organization during vegetative growth') --- Class Changed: http://www.geneontology.org/go#GO_0071320 label: cellular response to cAMP - SubClassOf('cellular response to cAMP' 'response to cAMP') - SubClassOf('cellular response to cAMP' 'cellular response to oxygen-containing compound') - SubClassOf('cellular response to cAMP' 'cellular response to organic cyclic compound') - SubClassOf('cellular response to cAMP' 'cellular response to organonitrogen compound') --- Class Changed: http://www.geneontology.org/go#FYPO_0002902 label: decreased protein localization to kinetochore - SubClassOf('decreased protein localization to kinetochore' 'abnormal protein localization to kinetochore') - SubClassOf('decreased protein localization to kinetochore' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - SubClassOf('decreased protein localization to kinetochore' 'decreased protein localization to chromosome') - SubClassOf('decreased protein localization to kinetochore' ObjectSomeValueFrom('inheres_in' 'protein localization to kinetochore')) - EquivalentClasses('decreased protein localization to kinetochore' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein localization to kinetochore')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002898 label: abolished protein phosphorylation during cellular response to DNA damage - EquivalentClasses('abolished protein phosphorylation during cellular response to DNA damage' ObjectIntersectionOf(PATO_0001558 ObjectSomeValueFrom('during' 'cellular response to DNA damage stimulus') ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'protein phosphorylation')) ) - SubClassOf('abolished protein phosphorylation during cellular response to DNA damage' 'abolished protein phosphorylation during vegetative growth') - SubClassOf('abolished protein phosphorylation during cellular response to DNA damage' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - SubClassOf('abolished protein phosphorylation during cellular response to DNA damage' ObjectSomeValueFrom('during' 'cellular response to DNA damage stimulus')) - SubClassOf('abolished protein phosphorylation during cellular response to DNA damage' ObjectSomeValueFrom('towards' 'protein phosphorylation')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002899 label: normal protein phosphorylation during cellular response to DNA damage - SubClassOf('normal protein phosphorylation during cellular response to DNA damage' ObjectSomeValueFrom('happens_during' 'cellular response to DNA damage stimulus')) - SubClassOf('normal protein phosphorylation during cellular response to DNA damage' ObjectSomeValueFrom('inheres_in' 'protein phosphorylation')) - SubClassOf('normal protein phosphorylation during cellular response to DNA damage' 'normal protein phosphorylation') - SubClassOf('normal protein phosphorylation during cellular response to DNA damage' ObjectSomeValueFrom('qualifier' PATO_0000461)) - EquivalentClasses('normal protein phosphorylation during cellular response to DNA damage' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'cellular response to DNA damage stimulus') ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein phosphorylation') ObjectSomeValueFrom('qualifier' PATO_0000461)) ) - SubClassOf('normal protein phosphorylation during cellular response to DNA damage' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002891 label: normal chromatin organization during vegetative growth - SubClassOf('normal chromatin organization during vegetative growth' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('normal chromatin organization during vegetative growth' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'chromatin organization') ObjectSomeValueFrom('qualifier' PATO_0000461)) ) - SubClassOf('normal chromatin organization during vegetative growth' 'normal cellular process during vegetative growth') - SubClassOf('normal chromatin organization during vegetative growth' ObjectSomeValueFrom('inheres_in' 'chromatin organization')) - SubClassOf('normal chromatin organization during vegetative growth' 'cellular component organization phenotype') - SubClassOf('normal chromatin organization during vegetative growth' ObjectSomeValueFrom('qualifier' PATO_0000461)) --- Class Changed: http://www.geneontology.org/go#GO_0000281 label: mitotic cytokinesis - SubClassOf('mitotic cytokinesis' 'cytokinesis') - EquivalentClasses('mitotic cytokinesis' ObjectIntersectionOf('cytokinesis' ObjectSomeValueFrom('part_of' 'mitotic cell cycle')) ) - SubClassOf('mitotic cytokinesis' ObjectSomeValueFrom('part_of' 'mitotic cell cycle')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002889 label: inviable elongated vegetative cell with abnormal septum - SubClassOf('inviable elongated vegetative cell with abnormal septum' ObjectSomeValueFrom('has_part' 'inviable vegetative cell')) - SubClassOf('inviable elongated vegetative cell with abnormal septum' 'inviable elongated vegetative cell') - SubClassOf('inviable elongated vegetative cell with abnormal septum' ObjectSomeValueFrom('has_part' 'elongated cell')) - SubClassOf('inviable elongated vegetative cell with abnormal septum' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) - SubClassOf('inviable elongated vegetative cell with abnormal septum' 'inviable vegetative cell with abnormal cell shape') - EquivalentClasses('inviable elongated vegetative cell with abnormal septum' ObjectIntersectionOf('cell phenotype' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('has_part' 'elongated cell') ObjectSomeValueFrom('has_part' 'inviable vegetative cell') ObjectSomeValueFrom('has_part' 'abnormal septum')) ) - SubClassOf('inviable elongated vegetative cell with abnormal septum' ObjectSomeValueFrom('has_part' 'abnormal septum')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002600 label: normal histone modification + SubClassOf('normal histone modification' 'cellular component organization phenotype') - SubClassOf('normal histone modification' 'normal chromatin organization during vegetative growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0002890 label: abnormal horsetail nucleus morphology - SubClassOf('abnormal horsetail nucleus morphology' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('abnormal horsetail nucleus morphology' 'abnormal nuclear morphology') - EquivalentClasses('abnormal horsetail nucleus morphology' ObjectIntersectionOf(PATO_0000051 ObjectSomeValueFrom('inheres_in' 'horsetail nucleus') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) - SubClassOf('abnormal horsetail nucleus morphology' ObjectSomeValueFrom('inheres_in' 'horsetail nucleus')) --- Class Changed: http://www.geneontology.org/go#FYPO_0001992 label: inviable elongated mononucleate vegetative cell with mislocalized septum - SubClassOf('inviable elongated mononucleate vegetative cell with mislocalized septum' 'inviable elongated vegetative cell with abnormal septum') --- Class Changed: http://www.geneontology.org/go#FYPO_0002900 label: abnormal DNA damage checkpoint during cellular response to UV - SubClassOf('abnormal DNA damage checkpoint during cellular response to UV' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('abnormal DNA damage checkpoint during cellular response to UV' ObjectSomeValueFrom('inheres_in' 'DNA damage checkpoint')) - SubClassOf('abnormal DNA damage checkpoint during cellular response to UV' 'normal DNA damage checkpoint during cellular response to UV') - SubClassOf('abnormal DNA damage checkpoint during cellular response to UV' 'abnormal DNA damage checkpoint') - SubClassOf('abnormal DNA damage checkpoint during cellular response to UV' 'abnormal cell cycle regulation during cellular response to gamma radiation') - SubClassOf('abnormal DNA damage checkpoint during cellular response to UV' ObjectSomeValueFrom('during' 'cellular response to UV')) - SubClassOf('abnormal DNA damage checkpoint during cellular response to UV' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('abnormal DNA damage checkpoint during cellular response to UV' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('during' 'cellular response to UV') ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'DNA damage checkpoint') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) --- Class Changed: http://www.geneontology.org/go#GO_0000122 label: negative regulation of transcription from RNA polymerase II promoter - SubClassOf('negative regulation of transcription from RNA polymerase II promoter' 'negative regulation of transcription, DNA-dependent') - SubClassOf('negative regulation of transcription from RNA polymerase II promoter' ObjectSomeValueFrom('negatively_regulates' 'transcription from RNA polymerase II promoter')) - EquivalentClasses('negative regulation of transcription from RNA polymerase II promoter' ObjectIntersectionOf('biological regulation' ObjectSomeValueFrom('negatively_regulates' 'transcription from RNA polymerase II promoter')) ) - SubClassOf('negative regulation of transcription from RNA polymerase II promoter' 'regulation of transcription from RNA polymerase II promoter') --- Class Changed: http://www.geneontology.org/go#FYPO_0002897 label: decreased protein phosphorylation during cellular response to DNA damage - SubClassOf('decreased protein phosphorylation during cellular response to DNA damage' ObjectSomeValueFrom('happens_during' 'cellular response to DNA damage stimulus')) - SubClassOf('decreased protein phosphorylation during cellular response to DNA damage' 'decreased protein phosphorylation during vegetative growth') - SubClassOf('decreased protein phosphorylation during cellular response to DNA damage' ObjectSomeValueFrom('inheres_in' 'protein phosphorylation')) - SubClassOf('decreased protein phosphorylation during cellular response to DNA damage' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('decreased protein phosphorylation during cellular response to DNA damage' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'cellular response to DNA damage stimulus') ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein phosphorylation')) ) --- Class Changed: http://www.geneontology.org/go#GO_0071277 label: cellular response to calcium ion - SubClassOf('cellular response to calcium ion' 'cellular response to metal ion') - SubClassOf('cellular response to calcium ion' 'response to calcium ion') --- Class Changed: http://www.geneontology.org/go#FYPO_0002888 label: mitotic cell cycle arrest before cell separation - EquivalentClasses('mitotic cell cycle arrest before cell separation' ObjectIntersectionOf(ObjectSomeValueFrom('during' 'traversing start control point of mitotic cell cycle') ObjectSomeValueFrom('inheres_in' 'mitotic cell cycle arrest') ObjectSomeValueFrom('precedes' 'mitotic cytokinetic cell separation') ObjectSomeValueFrom('qualifier' PATO_0000467)) ) - SubClassOf('mitotic cell cycle arrest before cell separation' ObjectSomeValueFrom('qualifier' PATO_0000467)) - SubClassOf('mitotic cell cycle arrest before cell separation' 'mitotic cell cycle arrest at START') - SubClassOf('mitotic cell cycle arrest before cell separation' 'abnormal cell cycle arrest in mitotic interphase') - SubClassOf('mitotic cell cycle arrest before cell separation' ObjectSomeValueFrom('precedes' 'mitotic cytokinetic cell separation')) - SubClassOf('mitotic cell cycle arrest before cell separation' ObjectSomeValueFrom('during' 'traversing start control point of mitotic cell cycle')) - SubClassOf('mitotic cell cycle arrest before cell separation' ObjectSomeValueFrom('inheres_in' 'mitotic cell cycle arrest')) --- Class Changed: http://www.geneontology.org/go#GO_1902410 label: mitotic cytokinetic process - EquivalentClasses('mitotic cytokinetic process' ObjectIntersectionOf('cytokinetic process' ObjectSomeValueFrom('part_of' 'mitotic cell cycle')) ) - SubClassOf('mitotic cytokinetic process' ObjectSomeValueFrom('part_of' 'mitotic cell cycle')) - SubClassOf('mitotic cytokinetic process' 'cytokinetic process') - SubClassOf('mitotic cytokinetic process' ObjectSomeValueFrom('part_of' 'mitotic cytokinesis')) --- Class Changed: http://www.geneontology.org/go#FYPO_0000856 label: normal nucleosome positioning + SubClassOf('normal nucleosome positioning' 'normal cellular process during vegetative growth') + SubClassOf('normal nucleosome positioning' 'cellular component organization phenotype') - SubClassOf('normal nucleosome positioning' 'normal chromatin organization during vegetative growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0002895 label: increased transcription during cellular response to calcium ion - SubClassOf('increased transcription during cellular response to calcium ion' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('increased transcription during cellular response to calcium ion' ObjectSomeValueFrom('inheres_in' 'transcription, DNA-dependent')) - SubClassOf('increased transcription during cellular response to calcium ion' 'increased transcription during vegetative growth') - SubClassOf('increased transcription during cellular response to calcium ion' ObjectSomeValueFrom('happens_during' 'cellular response to calcium ion')) - EquivalentClasses('increased transcription during cellular response to calcium ion' ObjectIntersectionOf(PATO_0002051 ObjectSomeValueFrom('happens_during' 'cellular response to calcium ion') ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'transcription, DNA-dependent')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002896 label: normal transcription during cellular response to calcium ion - EquivalentClasses('normal transcription during cellular response to calcium ion' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'cellular response to calcium ion') ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'transcription, DNA-dependent') ObjectSomeValueFrom('qualifier' PATO_0000461)) ) - SubClassOf('normal transcription during cellular response to calcium ion' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('normal transcription during cellular response to calcium ion' ObjectSomeValueFrom('happens_during' 'cellular response to calcium ion')) - SubClassOf('normal transcription during cellular response to calcium ion' 'normal transcription during vegetative growth') - SubClassOf('normal transcription during cellular response to calcium ion' ObjectSomeValueFrom('inheres_in' 'transcription, DNA-dependent')) - SubClassOf('normal transcription during cellular response to calcium ion' ObjectSomeValueFrom('qualifier' PATO_0000461)) --- Class Changed: http://www.geneontology.org/go#GO_0051591 label: response to cAMP - SubClassOf('response to cAMP' 'response to purine-containing compound') - SubClassOf('response to cAMP' 'response to organophosphorus') - SubClassOf('response to cAMP' 'response to oxygen-containing compound') --- Class Changed: http://www.geneontology.org/go#GO_1902409 label: mitotic cytokinetic cell separation - SubClassOf('mitotic cytokinetic cell separation' ObjectSomeValueFrom('part_of' 'mitotic cell cycle')) - SubClassOf('mitotic cytokinetic cell separation' 'mitotic cytokinetic process') - EquivalentClasses('mitotic cytokinetic cell separation' ObjectIntersectionOf('cytokinetic cell separation' ObjectSomeValueFrom('part_of' 'mitotic cell cycle')) ) - SubClassOf('mitotic cytokinetic cell separation' 'cytokinetic cell separation') - SubClassOf('mitotic cytokinetic cell separation' ObjectSomeValueFrom('part_of' 'mitotic cytokinesis')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002894 label: decreased transcription during cellular response to calcium ion - SubClassOf('decreased transcription during cellular response to calcium ion' 'decreased transcription during vegetative growth') - SubClassOf('decreased transcription during cellular response to calcium ion' ObjectSomeValueFrom('happens_during' 'cellular response to calcium ion')) - SubClassOf('decreased transcription during cellular response to calcium ion' ObjectSomeValueFrom('inheres_in' 'transcription, DNA-dependent')) - SubClassOf('decreased transcription during cellular response to calcium ion' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('decreased transcription during cellular response to calcium ion' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'cellular response to calcium ion') ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'transcription, DNA-dependent')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002901 label: normal protein localization to kinetochore - EquivalentClasses('normal protein localization to kinetochore' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein localization to kinetochore') ObjectSomeValueFrom('qualifier' PATO_0000461)) ) - SubClassOf('normal protein localization to kinetochore' ObjectSomeValueFrom('qualifier' PATO_0000461)) - SubClassOf('normal protein localization to kinetochore' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('normal protein localization to kinetochore' 'normal protein localization during vegetative growth') - SubClassOf('normal protein localization to kinetochore' ObjectSomeValueFrom('inheres_in' 'protein localization to kinetochore')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002076 label: inviable elongated cell with fragmented nucleus and increased septum thickness + SubClassOf('inviable elongated cell with fragmented nucleus and increased septum thickness' 'inviable elongated vegetative cell') + SubClassOf('inviable elongated cell with fragmented nucleus and increased septum thickness' 'inviable vegetative cell with abnormal cell shape') - SubClassOf('inviable elongated cell with fragmented nucleus and increased septum thickness' 'inviable elongated vegetative cell with abnormal septum') --- Class Changed: http://www.geneontology.org/go#GO_0071686 label: horsetail nucleus - SubClassOf('horsetail nucleus' 'nucleus') --- Class Changed: http://www.geneontology.org/go#GO_0070828 label: heterochromatin organization - SubClassOf('heterochromatin organization' 'chromatin organization') --- Class Changed: http://www.geneontology.org/go#GO_0046683 label: response to organophosphorus - SubClassOf('response to organophosphorus' 'response to organic substance') --- Class Changed: http://www.geneontology.org/go#FYPO_0002893 label: decreased repression of transcription during cellular response to cAMP - SubClassOf('decreased repression of transcription during cellular response to cAMP' ObjectSomeValueFrom('inheres_in' 'negative regulation of transcription from RNA polymerase II promoter')) - SubClassOf('decreased repression of transcription during cellular response to cAMP' 'abnormal negative regulation of transcription') - SubClassOf('decreased repression of transcription during cellular response to cAMP' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('decreased repression of transcription during cellular response to cAMP' ObjectSomeValueFrom('happens_during' 'cellular response to cAMP')) - SubClassOf('decreased repression of transcription during cellular response to cAMP' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('decreased repression of transcription during cellular response to cAMP' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'cellular response to cAMP') ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'negative regulation of transcription from RNA polymerase II promoter') ObjectSomeValueFrom('qualifier' PATO_0000460)) ) --- Class Changed: http://www.geneontology.org/go#GO_0051592 label: response to calcium ion - SubClassOf('response to calcium ion' 'response to metal ion') @New Classes